Perdomo was optioned to the Diamondbacks' alternate training site Saturday.
Perdomo is out of the lineup for Wednesday's game at Colorado.
Perdomo will start at shortstop and bat eighth Sunday against the Padres.
Perdomo made his MLB debut Saturday and struck out in his lone at-bat in a 7-0 loss to the Padres.
Perdomo is being called up to the majors Saturday, Jeff Passan of ESPN.com reports.
The Diamondbacks optioned Perdomo to Triple-A Reno on Tuesday.
Perdomo was added to the Diamondbacks' 40-man roster Friday.
Perdomo will be a part of the Diamondbacks' taxi squad this season, Jesse Sanchez of MLB.com reports.
Perdomo was reassigned to the Diamondbacks' minor-league camp Monday.
The Diamondbacks will not feel the need to rush Perdomo's development, after the team extended shortstop Nick Ahmed on Monday, Nick Piecoro of the Arizona Republic reports.